Is geneformer-celltype-ft free?

Unclear. GitHub found no license file, so check the README before reusing the code.

Is geneformer-celltype-ft still maintained?

Slowing down. Last change 5 months ago.

Can I trust geneformer-celltype-ft?

New, little track record. 0 stars, 5 months old. Look at the code and the owner before running it.

gitmanual

Reading the repo

Opening the box…

How to set up geneformer-celltype-ft (aarohi-0215/geneformer-celltype-ft) · gitmanual

Assembly instructions

aarohi-0215/geneformer-celltype-ft

Fine-tuned Geneformer vs. a PCA baseline for scRNA-seq cell-type annotation, as a reproducible containerized HPC pipeline.

Python#apptainer#bioinformatics#computational-biology#containerization

Before you start

Is it free?: UnclearGitHub found no license file, so check the README before reusing the code.
Still maintained?: Slowing downLast change 5 months ago.
Can I trust it?: New, little track record0 stars, 5 months old. Look at the code and the owner before running it.

Difficulty: Moderate
Time: about 15 min
Stars: ★ 0
Activity: Updated 5 months ago

GitHub didn't answer, so this is the saved copy from 16 h ago

Will it work on macOS?

Yes, it runs on macOS

You'll build it yourself with Python.

Your system

macOS Windows Linux

3 steps on macOS

Download setup.sh

Then run bash setup.sh. It stops at the first error and is safe to run again. Servers and tests aren't started; it lists them at the end. Read it first.

Clone the repository

Needs Git: xcode-select --install

git clone https://github.com/aarohi-0215/geneformer-celltype-ft.git
cd geneformer-celltype-ft

2
Install the required runtimes
Python 3.x (no version pinned)
```
brew install python
```
3
Install dependencies
```
conda env create -f environment.yml
```

Did you get it running?

No reports for macOS yet.

Still stuck? Get a written guide

GitManual AI Agent reads the 2 key files and writes a step-by-step guide for macOS. Once written, it's saved for everyone.

Yes, it runs on macOS

3 steps on macOS

Clone the repository

Install the required runtimes

Install dependencies

Did you get it running?

Still stuck? Get a written guide

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