Is geneformer-celltype-ft free?

Unclear. GitHub found no license file, so check the README before reusing the code.

Is geneformer-celltype-ft still maintained?

Slowing down. Last change 4 months ago.

Can I trust geneformer-celltype-ft?

New, little track record. 0 stars, 4 months old. Look at the code and the owner before running it.

gitmanual

Reading the repo

Opening the box…

How to install geneformer-celltype-ft on Linux (aarohi-0215/geneformer-celltype-ft) · gitmanual

How to install on Linux

aarohi-0215/geneformer-celltype-ft

Fine-tuned Geneformer vs. a PCA baseline for scRNA-seq cell-type annotation, as a reproducible containerized HPC pipeline.

Python#apptainer#bioinformatics#computational-biology#containerization

Before you start

Is it free?: UnclearGitHub found no license file, so check the README before reusing the code.
Still maintained?: Slowing downLast change 4 months ago.
Can I trust it?: New, little track record0 stars, 4 months old. Look at the code and the owner before running it.

Difficulty: Moderate
Time: about 15 min
Stars: ★ 0
Activity: Updated 4 months ago

Saved setup from 20 min ago

Will it work on Linux?

Yes, it runs on Linux

You'll build it yourself with Python.

Your system

macOS Windows Linux

3 steps on Linux

Download setup.sh

Then run bash setup.sh. It stops at the first error and is safe to run again. Servers and tests aren't started; it lists them at the end. Read it first.

Clone the repository

git clone https://github.com/aarohi-0215/geneformer-celltype-ft.git
cd geneformer-celltype-ft

2
Install the required runtimes
Python 3.x (no version pinned)
```
sudo apt install python3 python3-venv  # Debian/Ubuntu
```
3
Install dependencies
```
conda env create -f environment.yml
```

Did you get it running?

No reports for Linux yet.

Still stuck? Get a written guide

GitManual AI Agent reads the 2 key files and writes a step-by-step guide for Linux. Once written, it's saved for everyone.

Yes, it runs on Linux

3 steps on Linux

Clone the repository

Install the required runtimes

Install dependencies

Did you get it running?

Still stuck? Get a written guide

More like geneformer-celltype-ft that run on Linux