Is geneformer-celltype-ft free?

Unclear. GitHub found no license file, so check the README before reusing the code.

Is geneformer-celltype-ft still maintained?

Slowing down. Last change 4 months ago.

Can I trust geneformer-celltype-ft?

New, little track record. 0 stars, 4 months old. Look at the code and the owner before running it.

How to install on Windows

aarohi-0215/geneformer-celltype-ft

Fine-tuned Geneformer vs. a PCA baseline for scRNA-seq cell-type annotation, as a reproducible containerized HPC pipeline.

Python#apptainer#bioinformatics#computational-biology#containerization

Before you start

Is it free?: UnclearGitHub found no license file, so check the README before reusing the code.
Still maintained?: Slowing downLast change 4 months ago.
Can I trust it?: New, little track record0 stars, 4 months old. Look at the code and the owner before running it.

Difficulty: Moderate
Time: about 15 min
Stars: ★ 0
Activity: Updated 4 months ago

Saved setup from 21 min ago

Will it work on Windows?

Yes, it runs on Windows

You'll build it yourself with Python.

Your system

macOS Windows Linux

3 steps on Windows

Download setup.ps1

Then run powershell -ExecutionPolicy Bypass -File .\setup.ps1. It stops at the first error and is safe to run again. Servers and tests aren't started; it lists them at the end. Read it first.

Clone the repository

Needs Git: winget install Git.Git

git clone https://github.com/aarohi-0215/geneformer-celltype-ft.git
cd geneformer-celltype-ft

2
Install the required runtimes
Python 3.x (no version pinned)
```
winget install Python.Python.3.12
```
3
Install dependencies
```
conda env create -f environment.yml
```

Did you get it running?

No reports for Windows yet.

Still stuck? Get a written guide

GitManual AI Agent reads the 2 key files and writes a step-by-step guide for Windows. Once written, it's saved for everyone.

Reading the repo

Opening the box…

aarohi-0215/geneformer-celltype-ft

Fine-tuned Geneformer vs. a PCA baseline for scRNA-seq cell-type annotation, as a reproducible containerized HPC pipeline.

Python#apptainer#bioinformatics#computational-biology#containerization

Before you start

Is it free?: UnclearGitHub found no license file, so check the README before reusing the code.
Still maintained?: Slowing downLast change 4 months ago.
Can I trust it?: New, little track record0 stars, 4 months old. Look at the code and the owner before running it.

Yes, it runs on Windows

3 steps on Windows

Clone the repository

Install the required runtimes

Install dependencies

Did you get it running?

Still stuck? Get a written guide

More like geneformer-celltype-ft that run on Windows

Yes, it runs on Windows

3 steps on Windows

Clone the repository

Install the required runtimes

Install dependencies

Did you get it running?

Still stuck? Get a written guide

More like geneformer-celltype-ft that run on Windows